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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59780402_59790131_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59780402 - 59790131
Intron Length:
9730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAATACT
5'SS Class:
major
3'SS Sequence:
TTTATGCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCTTTATGC
Flanking Amino Acid:
RLDRVLESYLRTAEILYYLA
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
78.1
36.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.7
0.74
0.9
73.7
41.7
Minor 5ss
38.2
-1.3
2.9
53.2
43.5
Minor BPS
63.8
0.41
1.9
77.75
38.7

Associated Gene:

Gene:
MAN2A1
Ensembl Gene ID:
ENSAPLG00000011352
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011917
59732446 - 59862554
130109