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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59791594_59794355_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59791594 - 59794355
Intron Length:
2762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCTAT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
AATTCATAGATT
Flanking Amino Acid:
YDTSTPFLKMDDIQSSQDSL
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
0.9
72.8
34.5
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
40.2
-1.1
3.1
52.2
46
Minor BPS
49.9
0.07
1.9
71.3
39.7

Associated Gene:

Gene:
MAN2A1
Ensembl Gene ID:
ENSAPLG00000011352
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011917
59732446 - 59862554
130109