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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59813713_59814854_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59813713 - 59814854
Intron Length:
1142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTTTAGTAACA
Flanking Amino Acid:
ATTVSHEAYQISFLAHLPPL
Intron Amino Acid Position:
707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.9
36.3
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
71.7
0.49
0.9
66.8
34.3
Minor 5ss
46.6
-0.3
2.5
61.6
43.3
Minor BPS
58.5
0.26
2.2
80.01
35.9

Associated Gene:

Gene:
MAN2A1
Ensembl Gene ID:
ENSAPLG00000011352
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011917
59732446 - 59862554
130109