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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59815092_59815203_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59815092 - 59815203
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATACTAC
5'SS Class:
major
3'SS Sequence:
TCTCTATCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTATTTCAAAC
Flanking Amino Acid:
WFSGMSGLLEKINTKEDGKN
Intron Amino Acid Position:
786

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
64.4
36.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
78.9
0.65
0.8
74.1
29.8
Minor 5ss
49.6
-0
2.6
66.9
44.7
Minor BPS
49.9
-0
1.6
62.79
36.2

Associated Gene:

Gene:
MAN2A1
Ensembl Gene ID:
ENSAPLG00000011352
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011917
59732446 - 59862554
130109