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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59831029_59836874_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59831029 - 59836874
Intron Length:
5846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ATTACTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
CTTATATTACTT
Flanking Amino Acid:
QSLGVASLKNGQLEVIMDRR
Intron Amino Acid Position:
957

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
84.3
0.77
0.8
81.4
35.5
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
48.5
-0
1.9
68.95
42.4

Associated Gene:

Gene:
MAN2A1
Ensembl Gene ID:
ENSAPLG00000011352
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011917
59732446 - 59862554
130109