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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59837009_59851893_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59837009 - 59851893
Intron Length:
14885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TGATCTTGAAAA
Flanking Amino Acid:
LLERRHGTDVNEEKASVSFP
Intron Amino Acid Position:
1002

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
80.7
31.6
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
85.6
0.8
0.8
80.6
37
Minor 5ss
38.2
-1.3
3.1
49.9
40.6
Minor BPS
59.2
0.28
1.5
67.66
37.9

Associated Gene:

Gene:
MAN2A1
Ensembl Gene ID:
ENSAPLG00000011352
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011917
59732446 - 59862554
130109