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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59852095_59860236_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59852095 - 59860236
Intron Length:
8142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTCAGTAACT
Flanking Amino Acid:
NLRTIQIQSKVDPEPSDEAA
Intron Amino Acid Position:
1069

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.8
0.83
0.8
81.4
35.2
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
60
0.39
2.3
84.99
41.5

Associated Gene:

Gene:
MAN2A1
Ensembl Gene ID:
ENSAPLG00000011352
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011917
59732446 - 59862554
130109