Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59860348_59861932_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

59860348 - 59861932

Intron Length:

1585

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATACTGG

5'SS Class:

major

3'SS Sequence:

TTTTTTCCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCCT

U12 Branch Point Sequence:

TTTTTTTTTCCT

Flanking Amino Acid:

GLLCSTTQGKVKVHKLFNKF

Intron Amino Acid Position:

1106

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.7

0.47

1.1

55.6

44.1

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

92.5

0.96

0.6

85.6

29.1

Minor 5ss

48.7

-0.1

2.6

64.5

46.9

Minor BPS

45.5

-0.2

3.6

82.93

38.6

Associated Gene:

Gene:

MAN2A1

Ensembl Gene ID:

ENSAPLG00000011352

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011917

59732446 - 59862554

130109