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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59882820_59884755_R

Intron Information:

Intron Rank:
153486
Intron Class:
major
Intron Phase:
Intron Coordinates:
59882820 - 59884755
Intron Length:
1936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATAGT
5'SS Class:
major
3'SS Sequence:
TTTACCACCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTTGCTTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
75.3
40.7
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
74.4
0.55
0.9
71.1
34.3
Minor 5ss
35.7
-1.6
3.1
51.7
44.8
Minor BPS
66.7
0.52
1.7
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030050
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029819
59882235 - 59886083
3849