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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59995623_59996201_F

Intron Information:

Intron Rank:
128496
Intron Class:
major
Intron Phase:
Intron Coordinates:
59995623 - 59996201
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
GTCTTCTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATGTATTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82.2
0.72
0.8
80.3
31.7
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
49.9
-0.1
1.7
55.59
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019210
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032554
59995491 - 60005054
9564