Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60117558_60117993_F

Intron Information:

Intron Rank:

142494

Intron Class:

major

Intron Phase:

Intron Coordinates:

60117558 - 60117993

Intron Length:

436

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTATG

5'SS Class:

strong_major

3'SS Sequence:

CATTGTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAC

U12 Branch Point Sequence:

TGATTATTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

0.8

79.6

35.4

Major BPS

81.9

0.79

0.8

81.9

Major PPT

82.6

0.73

0.9

76.6

37.2

Minor 5ss

-1.8

2.8

39.3

40.3

Minor BPS

66.6

0.52

1.6

74.25

36.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026784

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036516

60117407 - 60145938

28532