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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6017823_6018715_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6017823 - 6018715
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTCTCTTAATT
Flanking Amino Acid:
FVKCADDWKKRPVSNSL*
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83.1
0.75
0.8
76.4
37.6
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
82.6
1.1
1
93.07
28.2

Associated Gene:

Gene:
LIPG
Ensembl Gene ID:
ENSAPLG00000008809
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009201
6017801 - 6023845
6045