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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6018809_6019373_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6018809 - 6019373
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATGACTT
Flanking Amino Acid:
IRVKSGETQQRFAFCVEDFQ
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
36.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80
0.68
0.7
73.6
31.5
Minor 5ss
29.3
-2.4
3.5
39
46.3
Minor BPS
49.7
0.05
2
73.82
43.2

Associated Gene:

Gene:
LIPG
Ensembl Gene ID:
ENSAPLG00000008809
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009201
6017801 - 6023845
6045