About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6020694_6021100_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6020694 - 6021100
Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TCTGCTCCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TTAAACAAAATG
Flanking Amino Acid:
SDVLGAIAYGTLGEVVKCEH
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
69.5
36.3
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
74.8
0.56
0.8
66.4
35.7
Minor 5ss
42.7
-0.8
2.7
50.7
39.7
Minor BPS
42.8
-0.6
2
51.18
42.8

Associated Gene:

Gene:
LIPG
Ensembl Gene ID:
ENSAPLG00000008809
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009201
6017801 - 6023845
6045