Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6021326_6022397_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6021326 - 6022397

Intron Length:

1072

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCAAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

CCTGGTACACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

AATTTCTTACCT

Flanking Amino Acid:

HVHGTIGRITGLDPAGPMFE

Intron Amino Acid Position:

199

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.16

0.7

88.8

25.1

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

60.9

0.25

51.9

41.6

Minor 5ss

22.7

-3.1

3.9

34.8

41.6

Minor BPS

69.9

0.7

1.6

83.19

37.7

Associated Gene:

Gene:

LIPG

Ensembl Gene ID:

ENSAPLG00000008809

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009201

6017801 - 6023845

6045