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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60224668_60226118_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60224668 - 60226118
Intron Length:
1451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TCATGTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGATTATCAATG
Flanking Amino Acid:
PGLGAAGPGAEQLNRFAGFG
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
68.2
43
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.3
0.66
0.9
73.1
37
Minor 5ss
35.8
-1.6
3.5
51.7
45
Minor BPS
47.8
-0.3
1.8
54.39
40.6

Associated Gene:

Gene:
SLC25A46
Ensembl Gene ID:
ENSAPLG00000012675
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013214
60224448 - 60236465
12018