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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6022510_6022720_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6022510 - 6022720
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGGA
5'SS Class:
major
3'SS Sequence:
CTTTCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGGAT
U12 Branch Point Sequence:
CTTTCCTTCACA
Flanking Amino Acid:
SIARLLDWLQENPLFKLENV
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
64
42.4
Major BPS
59.1
0.23
1.4
60.7
45.9
Major PPT
84.7
0.78
0.7
79.5
26
Minor 5ss
27.2
-2.6
3.6
37.6
47.2
Minor BPS
75
0.78
1.7
83.03
38.2

Associated Gene:

Gene:
LIPG
Ensembl Gene ID:
ENSAPLG00000008809
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009201
6017801 - 6023845
6045