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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60226162_60228373_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60226162 - 60228373
Intron Length:
2212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AATACTTTAAAT
Flanking Amino Acid:
RFAGFGIGLASLFTENVLAH
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
84.1
0.77
0.9
86.1
25.6
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
67
0.61
1.4
78.06
37.5

Associated Gene:

Gene:
SLC25A46
Ensembl Gene ID:
ENSAPLG00000012675
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013214
60224448 - 60236465
12018