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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60228432_60228900_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60228432 - 60228900
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATCTT
5'SS Class:
major
3'SS Sequence:
ATATTTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATATTTTTAACA
Flanking Amino Acid:
PCIVLRRQCQVNYHARNYHL
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.8
38.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
77.8
0.63
1
74
39.7
Minor 5ss
45.6
-0.5
3
67.2
43.9
Minor BPS
76
0.81
1.1
78.1
31.8

Associated Gene:

Gene:
SLC25A46
Ensembl Gene ID:
ENSAPLG00000012675
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013214
60224448 - 60236465
12018