About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60229790_60232008_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60229790 - 60232008
Intron Length:
2219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGCTT
5'SS Class:
major
3'SS Sequence:
CTTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATCCATAGTA
Flanking Amino Acid:
GIVSEFTPLPRELSHKWNLK
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
68
42.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.3
0.88
0.6
88.7
20.6
Minor 5ss
42.8
-0.8
3.4
65
46.3
Minor BPS
58.7
0.27
1.8
73.55
38.1

Associated Gene:

Gene:
SLC25A46
Ensembl Gene ID:
ENSAPLG00000012675
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013214
60224448 - 60236465
12018