About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60290451_60303795_F

Intron Information:

Intron Rank:
149228
Intron Class:
major
Intron Phase:
Intron Coordinates:
60290451 - 60303795
Intron Length:
13345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
AGTCTTACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
88.8
0.87
0.6
84
23.9
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
43.1
-0.4
1.7
59.21
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030239
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035266
60289392 - 60303891
14500