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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6031769_6032136_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6031769 - 6032136
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATCT
Flanking Amino Acid:
YNGGVGRCAQAKQWGWTQGR
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90
0.9
0.7
84.5
30.1
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
68.3
0.65
1.5
82.72
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008813
6030390 - 6033096
2707