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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60332101_60336361_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60332101 - 60336361
Intron Length:
4261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATCT
Flanking Amino Acid:
TIKTWDLPSGCLIDCFLLDS
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
72
34.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
83.7
0.76
0.6
82.1
22.7
Minor 5ss
28.2
-2.5
2.7
28.9
37.2
Minor BPS
80.3
1.03
1.4
95.73
30.7

Associated Gene:

Gene:
WDR36
Ensembl Gene ID:
ENSAPLG00000012829
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028871
60312181 - 60344340
32160