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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60336470_60337580_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60336470 - 60337580
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
CTTGCTTTAAAA
Flanking Amino Acid:
AHVDDLGIYLWSNRSLYSLV
Intron Amino Acid Position:
639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
91.2
0.93
0.6
84.1
30.8
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
65.1
0.47
1.5
71.99
40.5

Associated Gene:

Gene:
WDR36
Ensembl Gene ID:
ENSAPLG00000012829
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028871
60312181 - 60344340
32160