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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6034924_6035106_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6034924 - 6035106
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGATTA
5'SS Class:
major
3'SS Sequence:
CTTTTATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTCCTTTTAACT
Flanking Amino Acid:
DKEDESGVHRFESNGVANGI
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
71.5
35
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
89.7
0.89
0.7
84.8
28.7
Minor 5ss
42.8
-0.8
3.1
52.9
44.9
Minor BPS
67.5
0.63
1.3
76.22
41

Associated Gene:

Gene:
C18orf32
Ensembl Gene ID:
ENSAPLG00000017090
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036565
6034696 - 6035181
486