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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60370074_60371607_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
60370074 - 60371607
Intron Length:
1534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCAGCAG
U12 Branch Point Sequence:
CCGCCAGCAGCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
36
-0.8
1.5
37
40.7
Major PPT
85.4
0.8
0.8
80.9
31.1
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
32.9
-1.3
2.2
36.88
40.4

Associated Gene:

Gene:
CAMK4
Ensembl Gene ID:
ENSAPLG00000013623
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034170
60369519 - 60528059
158541