Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60371832_60442406_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

60371832 - 60442406

Intron Length:

70575

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGGAGG

5'SS Class:

major

3'SS Sequence:

TTTTTTAATTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATT

Flanking Amino Acid:

HYFELESELGRGATSIVYRC

Intron Amino Acid Position:

229

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.59

60.8

45.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

82.9

0.74

0.8

83.1

32.2

Minor 5ss

26.7

-2.7

31.4

42.5

Minor BPS

84.9

1.17

0.8

94.97

24.6

Associated Gene:

Gene:

CAMK4

Ensembl Gene ID:

ENSAPLG00000013623

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034170

60369519 - 60528059

158541

ENSAPLT00000014231

60371146 - 60528059

156914