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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60371832_60458014_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60371832 - 60458014
Intron Length:
86183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
TGCTTTTAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
CTGCTTTTAACC
Flanking Amino Acid:
LLRAGVRAGTVDKKIVRTEI
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
60.8
45.3
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
72.2
0.5
1
66.7
43.1
Minor 5ss
26.7
-2.7
3
31.4
42.5
Minor BPS
64.5
0.43
1.3
66.7
39.4

Associated Gene:

Gene:
CAMK4
Ensembl Gene ID:
ENSAPLG00000013623
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038236
60370932 - 60528059
157128
ENSAPLT00000036330
60370453 - 60528059
157607
ENSAPLT00000017627
60370932 - 60528059
157128