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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60458078_60458717_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60458078 - 60458717
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
GTTTTTTTACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGAAT
U12 Branch Point Sequence:
GTTTTTTTACCA
Flanking Amino Acid:
VLLRLSHPNIIKLKEIFETP
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
72.4
32.9
Major BPS
58
0.2
1.3
67.7
36.5
Major PPT
83.6
0.76
0.9
78
40.1
Minor 5ss
43.1
-0.8
2.8
56.6
41.9
Minor BPS
65.7
0.49
1.6
75.16
36.6

Associated Gene:

Gene:
CAMK4
Ensembl Gene ID:
ENSAPLG00000013623
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036330
60370453 - 60528059
157607
ENSAPLT00000034170
60369519 - 60528059
158541
ENSAPLT00000017627
60370932 - 60528059
157128
ENSAPLT00000014231
60371146 - 60528059
156914
ENSAPLT00000038236
60370932 - 60528059
157128