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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60512646_60514185_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60512646 - 60514185
Intron Length:
1540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
AAAATCTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
AAAATCTTAACA
Flanking Amino Acid:
TPAPDAPLKIADFGLSKIVE
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
62.2
0.28
1.1
55.5
43.5
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
67.5
0.55
1.3
68.79
36.6

Associated Gene:

Gene:
CAMK4
Ensembl Gene ID:
ENSAPLG00000013623
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038236
60370932 - 60528059
157128
ENSAPLT00000036330
60370453 - 60528059
157607
ENSAPLT00000034170
60369519 - 60528059
158541
ENSAPLT00000014231
60371146 - 60528059
156914