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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60512646_60517812_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60512646 - 60517812
Intron Length:
5167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTATCGTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATCTTGTTGACA
Flanking Amino Acid:
TPAPDAPLKIAPEILRGCAY
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.6
0.67
0.9
73.7
36.7
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
53.7
0.11
2.1
67.65
39.1

Associated Gene:

Gene:
CAMK4
Ensembl Gene ID:
ENSAPLG00000013623
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017627
60370932 - 60528059
157128