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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60522864_60523754_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60522864 - 60523754
Intron Length:
891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTTTGTGATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGCATTTTATCT
Flanking Amino Acid:
DDVSLNAKDLVKKLIVLDPK
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.9
0.56
1
69.4
40.8
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
53.1
0.17
1.6
68.51
42.7

Associated Gene:

Gene:
CAMK4
Ensembl Gene ID:
ENSAPLG00000013623
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034170
60369519 - 60528059
158541
ENSAPLT00000017627
60370932 - 60528059
157128
ENSAPLT00000014231
60371146 - 60528059
156914
ENSAPLT00000038236
60370932 - 60528059
157128
ENSAPLT00000036330
60370453 - 60528059
157607