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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6053758_6054389_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6053758 - 6054389
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTCCTTATCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
AATTCCTTATCT
Flanking Amino Acid:
EATISVCKSLVEKNPRTGNL
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
74
0.54
0.9
66.9
39
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
76
0.9
1.5
88.02
36.7

Associated Gene:

Gene:
DYM
Ensembl Gene ID:
ENSAPLG00000007759
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008119
6043214 - 6201879
158666