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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6054484_6055263_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6054484 - 6055263
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGTTACTGATTC
Flanking Amino Acid:
KELKISAECQNHLFIWQAHN
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.6
29.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
77.8
0.63
0.8
69.5
36.8
Minor 5ss
38.7
-1.3
2.7
47.6
34.4
Minor BPS
49.5
-0
1.9
65.35
40

Associated Gene:

Gene:
DYM
Ensembl Gene ID:
ENSAPLG00000007759
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008119
6043214 - 6201879
158666