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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60546272_60548404_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60546272 - 60548404
Intron Length:
2133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
CATTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATATCTTCCATT
Flanking Amino Acid:
DSEWRVAKKTKDATVWRKPS
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.2
0.77
0.8
81.7
34.2
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
49.6
0.05
1.9
71.24
40.2

Associated Gene:

Gene:
STARD4
Ensembl Gene ID:
ENSAPLG00000013793
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014372
60542574 - 60548509
5936