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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60601643_60605608_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60601643 - 60605608
Intron Length:
3966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TTCCTCTTCACA
Flanking Amino Acid:
TSRGDGGFPEGCLPISKEVN
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72
39.3
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
84
0.76
0.7
79.2
26.4
Minor 5ss
33.7
-1.9
3.5
47
48.3
Minor BPS
60.7
0.33
1.8
72.02
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027155
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045475
60601517 - 60605698
4182