About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60623141_60626128_R

Intron Information:

Intron Rank:
131234
Intron Class:
major
Intron Phase:
Intron Coordinates:
60623141 - 60626128
Intron Length:
2988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTATTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.6
0.67
0.9
79
34.1
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
62.5
0.47
1.8
81.72
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017826
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045367
60622457 - 60626280
3824