About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60625282_60625431_F

Intron Information:

Intron Rank:
146692
Intron Class:
major
Intron Phase:
Intron Coordinates:
60625282 - 60625431
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTATTCTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
68.2
42.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
66.8
0.38
1.2
68.5
40.8
Minor 5ss
35.7
-1.6
3.2
45.4
43.6
Minor BPS
73.8
0.83
1.5
88.57
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029029
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019278
60622746 - 60628387
5642