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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60625282_60628311_F

Intron Information:

Intron Rank:
146696
Intron Class:
major
Intron Phase:
Intron Coordinates:
60625282 - 60628311
Intron Length:
3030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTGCTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
68.2
42.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
81.1
0.7
0.8
76.6
32.2
Minor 5ss
35.7
-1.6
3.2
45.4
43.6
Minor BPS
60.5
0.33
2.2
78.78
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029029
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034580
60622746 - 60628691
5946