About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6067903_6088264_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6067903 - 6088264
Intron Length:
20362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CGTTGTTTATCC
Flanking Amino Acid:
LLYGIASGVATGLRTVFTLG
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
80.7
33.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
93.2
0.97
0.6
89.1
19.8
Minor 5ss
36.4
-1.5
3.2
50.5
40
Minor BPS
49.3
-0
2
62.32
43.6

Associated Gene:

Gene:
DYM
Ensembl Gene ID:
ENSAPLG00000007759
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008119
6043214 - 6201879
158666