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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60775944_60776760_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60775944 - 60776760
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACGTGAA
5'SS Class:
major
3'SS Sequence:
ATCATAATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATATCATAATT
Flanking Amino Acid:
DGERSVLSEVNAKNDMVPPL
Intron Amino Acid Position:
611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
71.5
34.1
Major BPS
100
1.24
0.5
100
0
Major PPT
70.3
0.46
1
59.8
44.5
Minor 5ss
32.6
-2
3.4
39.5
40.8
Minor BPS
57.1
0.3
1.6
73.26
37.2

Associated Gene:

Gene:
EPB41L4A
Ensembl Gene ID:
ENSAPLG00000015395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016115
60773167 - 60905292
132126
ENSAPLT00000038728
60773251 - 60871612
98362
ENSAPLT00000037568
60773251 - 60871612
98362