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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60776872_60777751_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60776872 - 60777751
Intron Length:
880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
GTGTCTCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAA
U12 Branch Point Sequence:
CTGTCATGAATT
Flanking Amino Acid:
QLKEIPYTKIETQGDPIRIR
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
77.7
33.3
Major BPS
75.5
0.63
1
66.3
40.4
Major PPT
70.9
0.47
0.9
65.3
36.3
Minor 5ss
42
-0.9
3
54.7
43.6
Minor BPS
57.1
0.3
1.8
73.94
43

Associated Gene:

Gene:
EPB41L4A
Ensembl Gene ID:
ENSAPLG00000015395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037568
60773251 - 60871612
98362
ENSAPLT00000016115
60773167 - 60905292
132126
ENSAPLT00000038728
60773251 - 60871612
98362