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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60777821_60778466_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60777821 - 60778466
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TAATGCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACTT
Flanking Amino Acid:
QAKEELWKHIQKELVDPSGL
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
77.2
32.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
71.7
0.49
0.9
62.7
43.7
Minor 5ss
36.1
-1.6
2.9
47.9
41.8
Minor BPS
70.1
0.71
1.5
86.64
33.8

Associated Gene:

Gene:
EPB41L4A
Ensembl Gene ID:
ENSAPLG00000015395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038728
60773251 - 60871612
98362
ENSAPLT00000037568
60773251 - 60871612
98362
ENSAPLT00000016115
60773167 - 60905292
132126