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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60778515_60784239_R

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
60778515 - 60784239
Intron Length:
5725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTATGTACC
5'SS Class:
weak_major
3'SS Sequence:
TTGGTATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTTCACAGTT
Flanking Amino Acid:
NYRRSRHRSRSRSPDVQAKE
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.9
0.33
1.3
64.2
40.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.7
0.58
0.9
70.4
40.3
Minor 5ss
44.6
-0.6
2.4
56
35.3
Minor BPS
46.7
-0.1
2
69.82
41.2

Associated Gene:

Gene:
EPB41L4A
Ensembl Gene ID:
ENSAPLG00000015395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038728
60773251 - 60871612
98362
ENSAPLT00000037568
60773251 - 60871612
98362
ENSAPLT00000016115
60773167 - 60905292
132126