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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60790352_60795357_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60790352 - 60795357
Intron Length:
5006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGATCTTTAAAT
Flanking Amino Acid:
ENESGQPVRRRSRSRCNTSS
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
84.2
0.77
0.7
77.7
31.2
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
73.6
0.82
1.3
83.21
37.2

Associated Gene:

Gene:
EPB41L4A
Ensembl Gene ID:
ENSAPLG00000015395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037568
60773251 - 60871612
98362