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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60793530_60795357_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60793530 - 60795357
Intron Length:
1828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTAATATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ACTTCCTTAATA
Flanking Amino Acid:
ENESGQPVRRRKTQNCGEDS
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.8
0.6
0.9
69.4
40.1
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
82.6
1.02
1
81.61
33.9

Associated Gene:

Gene:
EPB41L4A
Ensembl Gene ID:
ENSAPLG00000015395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038728
60773251 - 60871612
98362
ENSAPLT00000016115
60773167 - 60905292
132126