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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60798108_60801888_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60798108 - 60801888
Intron Length:
3781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TACTTTTATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTACTTTTATT
Flanking Amino Acid:
TKIIAPSPVKSFKKMKNENS
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78
38.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.2
0.63
0.9
77.9
35.3
Minor 5ss
33.7
-1.9
3
42.3
44.5
Minor BPS
60.7
0.42
1.6
77.32
39.1

Associated Gene:

Gene:
EPB41L4A
Ensembl Gene ID:
ENSAPLG00000015395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038728
60773251 - 60871612
98362
ENSAPLT00000037568
60773251 - 60871612
98362
ENSAPLT00000016115
60773167 - 60905292
132126