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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60826129_60826507_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60826129 - 60826507
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTATA
5'SS Class:
strong_major
3'SS Sequence:
CCCAATATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TTTCCCCCAATA
Flanking Amino Acid:
KNKKQVGKYFWPRITKVHFK
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.8
35.3
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
68.9
0.43
1
60.7
38.7
Minor 5ss
38.1
-1.3
3.1
47.2
43.7
Minor BPS
56.7
0.21
1.9
74.38
36.9

Associated Gene:

Gene:
EPB41L4A
Ensembl Gene ID:
ENSAPLG00000015395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038728
60773251 - 60871612
98362
ENSAPLT00000037568
60773251 - 60871612
98362
ENSAPLT00000016115
60773167 - 60905292
132126