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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60843449_60855295_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60843449 - 60855295
Intron Length:
11847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTCTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCTTCCATCATC
Flanking Amino Acid:
LRYCDRSHQTYWLDPAKTLA
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
79.7
30.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
75.2
0.57
0.9
68.6
36.8
Minor 5ss
30.1
-2.3
2.6
34
41.5
Minor BPS
55.5
0.15
2
70.88
41

Associated Gene:

Gene:
EPB41L4A
Ensembl Gene ID:
ENSAPLG00000015395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016115
60773167 - 60905292
132126
ENSAPLT00000038728
60773251 - 60871612
98362
ENSAPLT00000037568
60773251 - 60871612
98362