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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_60964401_60964924_R

Intron Information:

Intron Rank:
145959
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
60964401 - 60964924
Intron Length:
524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTTTC
5'SS Class:
weak_major
3'SS Sequence:
TATTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
77
32.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.8
0.94
0.7
84.8
35.4
Minor 5ss
61.5
0.39
2.2
74.2
34.9
Minor BPS
66
0.58
1.5
81.3
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025938
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033230
60964382 - 60969371
4990